Package: corHMM 2.10
corHMM: Hidden Markov Models of Character Evolution
Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
Authors:
corHMM_2.10.tar.gz
corHMM_2.10.zip(r-4.5)corHMM_2.10.zip(r-4.4)corHMM_2.10.zip(r-4.3)
corHMM_2.10.tgz(r-4.4-any)corHMM_2.10.tgz(r-4.3-any)
corHMM_2.10.tar.gz(r-4.5-noble)corHMM_2.10.tar.gz(r-4.4-noble)
corHMM_2.10.tgz(r-4.4-emscripten)corHMM_2.10.tgz(r-4.3-emscripten)
corHMM.pdf |corHMM.html✨
corHMM/json (API)
| # Install 'corHMM' in R: |
| install.packages('corHMM', repos = c('https://thej022214.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/thej022214/corhmm/issues
- primates - Example datasets
- primates.paint - Example datasets
- rayDISC.example - Example datasets
Last updated 16 days agofrom:aa7efef8fb. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 21 2024 |
| R-4.5-win | WARNING | Oct 21 2024 |
| R-4.5-linux | WARNING | Oct 21 2024 |
| R-4.4-win | WARNING | Oct 21 2024 |
| R-4.4-mac | WARNING | Oct 21 2024 |
| R-4.3-win | WARNING | Oct 21 2024 |
| R-4.3-mac | WARNING | Oct 21 2024 |
Exports:ancRECONancRECON_sliceComputeCIConvertPhangornReconstructionscorDISCcorHMMcorHMMDredgecorHMMDredgeBasedev.raydiscdropStateMatParsequateStateMatParsfitCorrelationTestget_batch_profile_likgetFullMatgetModelTablegetRateCatMatgetStateMat4DatkFoldCrossValidationmakeSimmapplot_batch_profile_likplotMKmodelplotRECONrayDISCsimMarkov
Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcorpcorcpp11DEoptimdigestdoParallelexpmfansifarverfastmatchforeachgenericsGenSAggplot2gluegmpgridExtragtableigraphisobanditeratorslabelinglatticelhslifecyclemagrittrmapsMASSMatrixmgcvmnormtmunsellnlmenloptrnnetnumDerivoptimParallelphangornphytoolspillarpkgconfigquadprogR6RColorBrewerRcpprlangRmpfrscalesscatterplot3dtibbleutf8vctrsviridisviridisLitewithr
