corHMM - Hidden Markov Models of Character Evolution
Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
Last updated 4 hours ago
9.65 score 11 stars 2 packages 426 scripts 652 downloadshisse - Hidden State Speciation and Extinction
Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Last updated 19 days ago
8.29 score 6 stars 152 scripts 786 downloadsOUwie - Analysis of Evolutionary Rates in an OU Framework
Estimates rates for continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck based Hansen models that allow both the strength of the pull and stochastic motion to vary across selective regimes. Beaulieu et al (2012).
Last updated 8 days ago
8.23 score 9 stars 157 scripts 725 downloads