corHMM - Hidden Markov Models of Character Evolution
Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
Last updated 18 days ago
9.48 score 12 stars 2 dependents 422 scripts 731 downloadshisse - Hidden State Speciation and Extinction
Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Last updated 1 months ago
8.45 score 6 stars 152 scripts 1.1k downloadsOUwie - Analysis of Evolutionary Rates in an OU Framework
Estimates rates for continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck based Hansen models that allow both the strength of the pull and stochastic motion to vary across selective regimes. Beaulieu et al (2012).
Last updated 23 days ago
8.37 score 9 stars 161 scripts 818 downloads